Microbiome news, articles and features | Âé¶čŽ«Ăœ /topic/microbiome/ Science news and science articles from Âé¶čŽ«Ăœ Wed, 24 Jun 2026 15:27:28 +0000 en-US hourly 1 https://wordpress.org/?v=7.0.1 242057827 Faecal transplant makes the brains of old mice act young again /article/2531241-faecal-transplant-makes-the-brains-of-old-mice-act-young-again/?utm_campaign=RSS|NSNS&utm_content=microbiome&utm_medium=RSS&utm_source=NSNS Fri, 19 Jun 2026 16:48:29 +0000 /?post_type=article&p=2531241 2531241 Ötzi’s frozen remains may harbour metabolically active microbes /article/2528789-otzis-frozen-remains-may-harbour-metabolically-active-microbes/?utm_campaign=RSS|NSNS&utm_content=microbiome&utm_medium=RSS&utm_source=NSNS Wed, 03 Jun 2026 00:00:01 +0000 /?post_type=article&p=2528789 2528789 Your oral microbiome could affect your weight, liver and diabetes risk /article/2524866-your-oral-microbiome-could-affect-your-weight-liver-and-diabetes-risk/?utm_campaign=RSS|NSNS&utm_content=microbiome&utm_medium=RSS&utm_source=NSNS Thu, 30 Apr 2026 16:00:53 +0000 /?post_type=article&p=2524866 2524866 Urban living may be causing big changes to our oestrogen levels /article/2522701-urban-living-may-be-causing-big-changes-to-our-oestrogen-levels/?utm_campaign=RSS|NSNS&utm_content=microbiome&utm_medium=RSS&utm_source=NSNS Mon, 13 Apr 2026 19:00:29 +0000 /?post_type=article&p=2522701
Our gut microbiome has a significant impact on our hormones
nopparit/Getty Images

Discarded sex hormones can be returned to the bloodstream by bacteria in the gut – and now, a study has found that there are far more of these sex-hormone-recycling bacteria in the guts of people in industrialised societies than in those of hunter-gatherers and non-industrial farmers. This might mean that, as a result of urban living, some people have higher blood levels of certain sex hormones, which would have profound health effects.

“We don’t how the body would respond to this increased input,” says Rebecca Brittain at Jagiellonian University Medical College in Poland. “But the implications could be quite large.”

Sex hormones, such as oestrogens, circulate in the blood. When levels are too high, cells in the liver add a chemical tag that results in a hormone being excreted, often via the gut. But that tag happens to be a sugar molecule that certain bacteria feed on. So, some bacteria in the gut cut off the tags, using enzymes called beta-glucuronidases.

Once a tag is removed, a hormone can be reabsorbed by the body and end up back in the bloodstream. Studies suggest that substantial proportions of excreted sex hormones are recycled by gut bacteria in this way.

In 2011, to describe all the gut bacteria that can alter oestrogens, and thus potentially affect blood levels in both sexes. Earlier this year, it was proposed that be used to describe the gut bacteria that can affect testosterone levels.

The latest study from Brittain’s team has compared the oestrobolomes of hundreds of people from 24 populations around the world, using data from previous studies in which their gut microbiomes were sequenced. These populations included, for example, hunter-gatherers in Botswana and Nepal, rural farmers in Venezuela and Nepal, and city dwellers in Philadelphia and Colorado.

Specifically, Brittain’s team looked for genetic sequences coding for beta-glucuronidase enzymes, measuring the overall proportion of these sequences and their diversity. The results suggest that the oestrogen-recycling capacity of gut microbes in industrialised populations is up to seven times greater than in the hunter-gathering and rural farming populations, with twice the diversity too.

The team also found that there is up to three times the recycling capacity in babies who are fed formula than in those who are breastfed, with up to 11 times the diversity. People’s age, sex and BMI, however, made no difference to their oestrobolomes.

Brittain’s team and others are now trying to establish if the higher recycling capacity suggested by the gene sequences really does correspond with higher levels of oestrogen recycling and, most crucially, if this results in higher blood levels of the hormones. It could be, for instance, that people’s bodies can adjust hormone levels to partially or completely compensate for higher recycling.

But if some individuals do have higher blood levels of oestrogens throughout their lives because of their microbiomes, it could have a big impact on their fertility and health, increasing the risk of certain cancers, for instance. But in some cases, these effects could be beneficial. “The assumption is usually that higher oestrogen recycling is harmful,” says Brittain. “I don’t think that’s a fair assumption. For some people with really low oestrogen levels this could be a good thing.”

“It is an interesting study that adds to the growing evidence of the importance of the gut microbiome function in human health and development,” says at Wake Forest University School of Medicine in North Carolina, who is investigating the possible links between the microbiome and the risk of breast cancer.

But it does have limitations, she says, including the fact that all the industrialised populations were in the US. “Additional cohorts, perhaps from Europe, could have strengthened the industrial associations,” says Cook.

Brittain says that she and her colleagues will try to identify the lifestyle factors responsible for the differences they found. “We would love to know so much more about these individuals, but the data didn’t exist, so we’ll do our own study,” she says.

Journal reference:

PNAS DOI: 10.1073/pnas.2523589123

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Frailty sets in far earlier than you’d expect, but you can reverse it /article/2516419-frailty-sets-in-far-earlier-than-youd-expect-but-you-can-reverse-it/?utm_campaign=RSS|NSNS&utm_content=microbiome&utm_medium=RSS&utm_source=NSNS Mon, 09 Mar 2026 16:00:48 +0000 /?post_type=article&p=2516419 2516419 Your microbiome may determine your risk of a severe allergic reaction /article/2517852-your-microbiome-may-determine-your-risk-of-a-severe-allergic-reaction/?utm_campaign=RSS|NSNS&utm_content=microbiome&utm_medium=RSS&utm_source=NSNS Tue, 03 Mar 2026 16:00:26 +0000 /?post_type=article&p=2517852
Peanuts are one of the most common food allergens
Radharc Images / Alamy
The microbiomes in our gut and mouth may determine whether people with a peanut allergy develop a life-threatening reaction. This could help explain why some people with the allergy experience relatively mild reactions, while others develop severe, or even fatal, symptoms. “There’s a big question around why some patients are more susceptible to more severe reactions,” says at the Autonomous University of Madrid in Spain. Peanut allergy occurs when the immune system mistakenly identifies proteins in the legume as a threat, causing it to produce excessive amounts of a particular type of antibody. This ramps up inflammation, leading to symptoms such as itching, swelling and vomiting. In extreme cases, peanut exposure causes anaphylaxis, a life-threatening reaction that typically involves breathing difficulties. JimĂ©nez-Saiz and his colleagues wondered whether the microbes that live on and within us play a role here, given the huge influence that our body’s various microbiomes have on our immune system. To find out, they inserted a small amount of peanut into the stomachs of three groups of mice without any allergies. The first group was reared to develop no microbiome (known as germ-free mice), while the second had a minimally diverse microbiome, and the third had a microbiome that is typical of a healthy mouse. Forty minutes later, the team found higher levels of two proteins that play a major role in peanut allergy, known as Ara h 1 and Ara h 2, in the small intestines of the germ-free and minimal-microbiome mice than in those with the most diverse microbiome.
Further analyses revealed that the latter group carried the highest levels of a group of bacteria called Rothia, especially the strain Rothia R3, which is involved in digesting and degrading peanuts in the gut. To explore whether Rothia R3 influences anaphylaxis risk, the researchers induced severe peanut allergies in a separate group of mice, which had a minimally diverse microbiome. They then implanted Rothia R3 into some of their guts, before delivering peanut paste directly into all of the animals’ stomachs. Forty minutes later, all the mice had developed anaphylaxis, but the body temperature of those that received Rothia R3 had dropped by just 2 per cent, on average, compared with 3.5 per cent for the mice that didn’t receive it. Anaphylaxis typically causes a drop in body temperature, which can lead to hypothermia and organ failure. The Rothia-implanted mice also had about half the levels of an immune molecule called MMCP-1 in their blood, which usually rises during anaphylaxis, compared to the control mice. “The findings are compelling,” says at Imperial College London. “If a similar immunological change occurred in people, you would expect this to reduce the severity of anaphylaxis symptoms.” In another experiment involving 19 people with peanut allergies, the team found that those with a greater tolerance of peanuts had substantially higher levels of Rothia bacteria in their saliva than those with more severe allergies. This suggests that the presence of these bacteria in people’s mouths, as well as in their gut, influences their anaphylaxis risk. Rothia probiotics could one day reduce the severity of anaphylaxis developing during a peanut allergy reaction, says Shamji. “The need for something like this is huge,” he says. It could particularly alleviate fear around accidental exposure to peanuts and reduce the risk of adverse reactions during oral immunotherapy, which aims to treat allergies by gradually exposing people to increasing doses of an allergen, he says. The team hopes to demonstrate the potential of such a treatment in a clinical trial by giving people with peanut allergies either Rothia probiotics or a placebo, before exposing them to low levels of peanuts, says JimĂ©nez-Saiz.
Journal reference:

Cell Host & Microbe

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How baby microbiomes in the West differ from those everywhere else /article/2516131-how-baby-microbiomes-in-the-west-differ-from-those-everywhere-else/?utm_campaign=RSS|NSNS&utm_content=microbiome&utm_medium=RSS&utm_source=NSNS Wed, 18 Feb 2026 16:00:02 +0000 /?post_type=article&p=2516131
A scanning electron micrograph of Bifidobacteria bacteria – the main genus found in the large intestine of infants
DR GARY GAUGLER/SCIENCE PHOTO LIBRARY

An unprecedented look at how the gut microbiome varies among babies in different parts of the world reveals that infants in the West lack a microbe that is common elsewhere. This could aid the development of probiotics, which are sometimes given to premature babies, that are tailored according to where the infant lives, to maximise the chance of these bacteria becoming established.

The first 1000 days of a child’s life are very important for seeding their microbiome, which influences everything from their immune function and mental health to their future disease risk. Our understanding of this was almost exclusively limited to infants in the West, but now, a global atlas of baby microbiomes is finally providing a broader picture.

at the Wellcome Sanger Institute in South Cambridgeshire, UK, and his colleagues sequenced more than 1900 genomes of a bacterium called Bifidobacteria longum, which has been .

These were taken from stool samples collected across the UK, Sweden, the US, and seven countries in South Asia and sub-Saharan Africa: Bangladesh, Pakistan, Kenya, Malawi, Burkina Faso, Uganda and Zimbabwe.

They zeroed in on two subspecies of B. longum: B. longum longum and B. longum infantis, which have been the focus of most previous infant gut microbiome studies. By combining their data with genomes sequenced in prior studies, the researchers found that around 70 per cent of infants from the African and South Asian countries had B. longum infantis in their guts by 2 months old, compared with fewer than 2 per cent of babies from the UK, US and Sweden. “Infantis is basically missing in Western settings,” says Shao.

In contrast, B. longum longum had established in the guts of about a third of infants from these Western countries by 2 months, compared with fewer than 10 per cent of those across the African and South Asian countries.

This suggests that B. longum longum and B. longum infantis – which both help to develop the immune system and prevent gut and blood infections – are primarily found in distinct regions, says Shao.

This is probably because they thrive on different diets, he says. “Bifidobacteria help to digest nutrients from breast milk, and the composition of this varies with the mother’s diet, so it could be that longum [longum] is better adapted to a Western diet while infantis thrives on diets in other regions,” he says. The babies without either B. longum longum or B. longum infantis probably had other, similar bacteria established in their gut microbiome, , says Shao.

This study increased the number of B. longum genomes from South Asia that scientists have ever analysed by about 17 times, and those from Africa by around 11 times. “This is a huge step forward for underrepresented populations,” says at the University of Birmingham, UK.

Probiotics are not generally recommended for full-term babies, but are . Off the back of this study, probiotics could be tailored to the region that the premature infant is from, says Hall. For instance, B. longum infantis probiotics may benefit those in parts of Africa and Asia, but it may not persist as well in the guts of Western infants. “Only by understanding how bacteria differ in various places can we understand which probiotics are going to be the best for kids in particular parts of the world,” she says.

Journal reference:

Cell

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‘Hidden’ group of gut bacteria may be essential to good health /article/2514857-hidden-group-of-gut-bacteria-may-be-essential-to-good-health/?utm_campaign=RSS|NSNS&utm_content=microbiome&utm_medium=RSS&utm_source=NSNS Mon, 09 Feb 2026 16:00:58 +0000 /?post_type=article&p=2514857
Gut bacteria that we barely know anything about may be essential for good health
3DMEDISPHERE/SCIENCE PHOTO LIBRARY
A mysterious group of bacteria seems to thrive in the gut microbiomes of people without illness, hinting that they may be crucial to good health. More than are estimated to reside in our gut, interacting with each other and our bodies to influence everything from our immune system to our sleep, rate of ageing and risk of mental health conditions. Yet about two-thirds of these species are part of the “hidden microbiome”, most of which we haven’t managed to grow in a lab or even name. We only know they exist after spotting their genomes in the gut. “A burning question still remains: are these species just bystanders or relevant to human health?” says  at the University of Cambridge. To get an idea, Almeida and his colleagues searched for the genetic fingerprints of bacteria in the array of genomes found in gut microbiome samples. These were taken from studies that involved more than 11,000 people from 39 countries, primarily in Europe, North America and Asia. About half of these people had no known medical condition, while the other half had been diagnosed with one of 13 conditions, including inflammatory bowel disease, obesity and chronic fatigue syndrome. The researchers linked 715 bacterial species to at least one of these conditions, of which 342 species were found in higher numbers when people had a condition and 373 were more numerous when people had a clean bill of health.
Among these candidates, a genus called CAG-170 emerged with the strongest link. “Consistently across different conditions, we found that CAG-170 seem to be markedly increased in health compared to disease,” says Almeida. In another part of the study, Almeida and his colleagues investigated which bacterial species were most associated with a healthy mix of gut microbes or an unbalanced one, known as dysbiosis. “We found that, again, CAG-170 seem to be having a pronounced effect,” says Almeida. “There was a clear correlation where, essentially, higher abundance of CAG-170 was associated with lower dysbiosis and a healthier gut microbiome.” To investigate why this might be, the team then looked into CAG-170 genomes, discovering genes for metabolic pathways that can produce high levels of vitamin B12, and for enzymes that break down a range of carbohydrates and fibres. There was no sign that CAG-170 bacteria use vitamin B12 themselves, but other species usually found alongside them often have the capacity to utilise it, says Almeida. “It seems like CAG-170 are taking more of an altruistic approach and providing metabolic support to the rest of the microbiome.” This is an important step towards better understanding which features of our gut microbiome are associated with health or illness, says at the University of Trento in Italy, whose work recently revealed what a healthy gut microbiome may look like, but didn’t specifically outline the mechanisms by which such bacteria may bring about these benefits. Whether high numbers of CAG-170 cause good health or are a consequence of it isn’t easy to answer, says Almeida. Working that out will require studies that investigate whether introducing CAG-170 reduces the risk of certain conditions. “The human microbiome and the human body are so tightly connected that they should be regarded as a single, extremely complex system,” says Segata. “Rather than discussing the causal role of the first with respect to the second, we should investigate how the overall system is linked to healthy or unhealthy states and to healthy and unhealthy diets.” Segata says it is important to follow up this research with nutritional clinical trials to assess which changes in diet affect which parts of the microbiome-human system. Almeida sees the potential of CAG-170 in two ways. The first is that these bacteria could be used as an indicator of gut microbiome health. The second is by opening the door to a new generation of probiotics designed to support overall health. CAG-170 could be a good candidate for probiotics, says Segata, but it is very challenging to grow these bacteria in the lab, let alone develop methods to deliver them alive into the gut and then actually colonise it. “Finding the best food or the best prebiotic supplement able to increase the amounts of CAG-170 is likely something more at hand than the development of those species as a probiotic product,” he says. But the genomic data offers a clue about what might help, says Almeida. CAG-170 bacteria seem unable to produce the amino acid arginine, so providing more of that may help culture the bacteria, or one day boost their presence in the gut.
Journal reference:

Cell Host & Microbe

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This doctor is on the hunt for people with first-rate faeces /article/2512644-this-doctor-is-on-the-hunt-for-people-with-first-rate-faeces/?utm_campaign=RSS|NSNS&utm_content=microbiome&utm_medium=RSS&utm_source=NSNS Fri, 30 Jan 2026 09:00:36 +0000 /?post_type=article&p=2512644 2512644 Faecal transplants could boost the effectiveness of cancer treatments /article/2513677-faecal-transplants-could-boost-the-effectiveness-of-cancer-treatments/?utm_campaign=RSS|NSNS&utm_content=microbiome&utm_medium=RSS&utm_source=NSNS Thu, 29 Jan 2026 12:46:29 +0000 /?post_type=article&p=2513677
Bacteria in stools could be an unexpected weapon in the fight against cancer
LEWIS HOUGHTON/SCIENCE PHOTO LIBRARY

For people not responding to a type of cancer treatment, a faecal transplant from someone who had success with the drug could boost their odds. Altering the gut microbiome has knock-on effects on the immune system, which seemed to help stabilise tumours in a small trial of people with kidney cancer.

Faecal microbiota transplantation (FMT) is a safe procedure that involves transferring stool samples from one person to the gut of another, with the hope it will improve their microbiome. It is approved for treating recurrent antibiotic-resistant Clostridioides difficile infections in the UK and the US, and has shown promise for other conditions, such as irritable bowel syndrome.

When treating cancer, immunotherapy drugs known as checkpoint inhibitors can be effective by helping the immune system destroy cancer cells, but they don’t work for everyone. Prior studies suggest that an  to the guts of those who don’t can be beneficial. “The microbiome is a strong regulator of host immunity, so we hypothesise that altering it can boost immunity to help kill cancer,” says at the Catholic University of the Sacred Heart in Rome, Italy.

But such studies typically focused on melanoma, a type of skin cancer, and didn’t compare the effects of faecal transplants to a placebo. To address these limitations, Ianiro and his colleagues recruited 45 adults with kidney cancer who had started taking the checkpoint inhibitor pembrolizumab plus axitinib, a drug that disrupts tumours’ blood supply, within the past two months.

They then randomly assigned the participants to receive either a stool transplant – collected from a man who went into remission from cancer after receiving checkpoint inhibitors – or a saline solution, both delivered into the large intestine via a small tube through the anus.

At three and six months after the first transplant, most of the participants then took two further doses of their assigned treatment – either an FMT or saline solution – but this time in the form of oral pills.

Within the FMT group, the participants’ cancer was stable for two years, on average, after their first transplant, compared with nine months in the placebo group. What’s more, just over half of those in the FMT group saw their tumours shrink, compared with only around a third in the placebo group.

“This meaningfully strengthens the evidence that the gut microbiome can be therapeutically manipulated to influence immunotherapy outcomes,” says at the University of Pittsburgh in Pennsylvania.

Exactly how the faecal transplantation may have helped is unclear, but analysis of stool samples collected from participants before and after the FMT suggests that it introduced a species of gut bacteria called Blautia wexlerae, which produces short-chain fatty acids known to .

The faecal transplants also seemed to alter levels of bacteria already present in the recipients’ guts. For instance, they reduced levels of a strain of Escherichia coli that promotes harmful inflammation and raised levels of Ruminococcus bromii, which encourages the growth of other bacteria that produce short-chain fatty acids.

The findings chime with another small trial out this week that showed FMT can substantially boost the effects of checkpoint inhibitors , compared to those on the immunotherapy alone.

These trials suggest that FMTs could also work against other tumour types that respond to checkpoint inhibitors – such as those affecting the bladder and head and neck – but large, randomised-controlled trials are needed to confirm this, says at the University of Montreal in Canada, who was involved in the non-small cell lung cancer trial.

Further research also needs to establish exactly which bacterial strains within faeces are beneficial, which could enable the creation of artificial microbial samples that can be produced for cancer treatment on a large scale, says Ianiro.

Journal reference:

Nature Medicine

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